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<NewsItem contentIssues="true" id="144941" important="false" status="posted" url="https://my3.my.umbc.edu/groups/cwitaffiliates/posts/144941">
<Title>NEW PUBLICATION: Using flux theory in dynamic omics data sets to identify differentially changing signals using DPoP</Title>
<Tagline>Harley Edwards, Ph.D. Candidate Marten Lab with Dr. Marten</Tagline>
<Body>
<![CDATA[
    <div class="html-content">
    <h3><span>Authors: </span></h3>
    <div>
    <strong>Harley Edwards</strong>, Joseph Zavorskas, <strong>Walker Huso</strong>, <strong>Alexander G. Doan</strong>, <strong>Caton Silbiger</strong>, Steven Harris, Ranjan Srivastava &amp; <strong>Mark R. Marten </strong> </div>
    <div><strong><br></strong></div>
    <h3><span>Title: </span></h3>
    <div><strong>Using flux theory in dynamic omics data sets to identify differentially changing signals using DPoP</strong></div>
    <div><br></div>
    <div><br></div>
    <div>
    <h3><span>ABSTRACT:</span></h3>
    <div>
    <h4>Background</h4>
    <div>Derivative profiling is a novel approach to identify differential signals from dynamic omics data sets. This approach applies variable step-size differentiation to time dynamic omics data. This work assumes that there is a general omics derivative that is a useful and descriptive feature of dynamic omics experiments. We assert that this omics derivative, or omics flux, is a valuable descriptor that can be used instead of, or with, fold change calculations.</div>
    <div><br></div>
    <h4>Results</h4>
    <div>The results of derivative profiling are compared to established methods such as Multivariate Adaptive Regression Splines, significance versus fold change analysis (Volcano), and an adjusted ratio over intensity (M/A) analysis to find that there is a statistically significant similarity between the results. This comparison is repeated for transcriptomic and phosphoproteomic expression profiles previously characterized in Aspergillus nidulans. This method has been packaged in an open-source, GUI-based MATLAB app, the Derivative Profiling omics Package (DPoP). Gene Ontology (GO) term enrichment has been included in the app so that a user can automatically/programmatically describe the over/under-represented GO terms in the derivative profiling results using domain specific knowledge found in their organism’s specific GO database file. The advantage of the DPoP analysis is that it is computationally inexpensive, it does not require fold change calculations, it describes both instantaneous as well as overall behavior, and it achieves statistical confidence with signal trajectories of a single bio-replicate over four or more points.</div>
    <div><br></div>
    <h4>Conclusions</h4>
    <div>While we apply this method to time dynamic transcriptomic and phosphoproteomic datasets, it is a numerically generalizable technique that can be applied to any organism and any field interested in time series data analysis. The app described in this work enables omics researchers with no computer science background to apply derivative profiling to their data sets, while also allowing multidisciplined users to build on the nascent idea of profiling derivatives in omics.</div>
    </div>
    </div>
    <div><br></div>
    <div>full article: <a href="https://doi.org/10.1186/s12859-024-05938-9" rel="nofollow external" class="bo">https://doi.org/10.1186/s12859-024-05938-9</a>
    </div>
    <div><br></div>
    </div>
]]>
</Body>
<Summary>Authors:   Harley Edwards, Joseph Zavorskas, Walker Huso, Alexander G. Doan, Caton Silbiger, Steven Harris, Ranjan Srivastava &amp; Mark R. Marten       Title:   Using flux theory in dynamic omics...</Summary>
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<Tag>fall-2024</Tag>
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<PostedAt>Mon, 21 Oct 2024 10:14:44 -0400</PostedAt>
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<NewsItem contentIssues="true" id="144939" important="false" status="posted" url="https://my3.my.umbc.edu/groups/cwitaffiliates/posts/144939">
<Title>NEW PUBLICATION: Chemo-Mechanical Instabilities in Lithium Cobalt Oxide at Higher State-of-Charge in Li-Ion Batteries,</Title>
<Tagline>AMEE Lab with Dr. &#199;apraz</Tagline>
<Body>
<![CDATA[
    <div class="html-content">
    <h3><span>Authors: </span></h3>
    <div>B. Bal*, B. Ozdogru*, <strong>M. Wable, </strong>V. Murugesan, G. M. Veith and Ö. <strong>Ö. Çapraz</strong>, </div>
    <div><strong><br></strong></div>
    <h3><span>Title: </span></h3>
    <div>
    <strong>Chemo-Mechanical Instabilities in Lithium Cobalt Oxide at Higher State-of-Charge in Li-Ion Batteries</strong>, Electrochimica Acta, 2024, In Press </div>
    <div><br></div>
    <div><br></div>
    <div>
    <h3><span>ABSTRACT:</span></h3>
    <div>Transition metal oxide cathodes are widely used in commercial Li-ion batteries. However, their practical charge capacity is limited due to severe chemo-mechanical instabilities at higher charge voltage, and state-of-charge condition. Here, in situ stress and strain measurements were synchronized to probe mechanical deformations on the lithium cobalt oxide (LCO) cathode via a multi-beam stress sensor and digital image correlation, respectively. In situ mechanical measurements revealed how Li removal from the electrode structure induces deformations on the LCO cathodes during cycling. The structure and morphology of the LCO cathodes were further investigated by X-ray diffraction (XRD) and scanning electron microscopy (SEM) studies. Two distinct electrochemical and mechanical behaviors were identified when the LCO was charged up to 4.65 V. The LCO undergoes a compressive stress generation when charged up to 4.2 V and surface fractures on the LCO particles were detected by SEM. LCO cathode experienced significantly large contractions (negative strains) when charged up to 4.65 V, where intergranular crack formation and phase transformation were detected on the LCO particles via SEM and XRD, respectively. Overall, the study bridges complicated structural deformations with in situ analysis of mechanical degradations in LCO cathodes charged at higher voltages. The correlation is vital to understanding instability mechanisms in transition metal oxides at high voltages for alkali metal ion batteries.</div>
    </div>
    <div><br></div>
    <div>full article: <a href="https://doi.org/10.1016/j.electacta.2024.145223" title="Persistent link using digital object identifier" rel="nofollow external" class="bo"><span><span>https://doi.org/10.1016/j.electacta.2024.145223</span></span></a>
    </div>
    <div><br></div>
    </div>
]]>
</Body>
<Summary>Authors:   B. Bal*, B. Ozdogru*, M. Wable, V. Murugesan, G. M. Veith and Ö. Ö. Çapraz,      Title:   Chemo-Mechanical Instabilities in Lithium Cobalt Oxide at Higher State-of-Charge in Li-Ion...</Summary>
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<Tag>capraz</Tag>
<Tag>fall-2024</Tag>
<Tag>research</Tag>
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<Sponsor>Chemical, Biochemical and Environmental Engineering</Sponsor>
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<PostedAt>Mon, 21 Oct 2024 10:11:53 -0400</PostedAt>
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<NewsItem contentIssues="true" id="144936" important="false" status="posted" url="https://my3.my.umbc.edu/groups/cwitaffiliates/posts/144936">
<Title>NEW PUBLICATION: Chemo-Mechanical Instabilities in Lithium Cobalt Oxide at Higher State-of-Charge in Li-Ion Batteries,</Title>
<Tagline>AMEE Lab with Dr. &#199;apraz</Tagline>
<Body>
<![CDATA[
    <div class="html-content">
    <div>B. Bal*, B. Ozdogru*, <strong>M. Wable, </strong>V. Murugesan, G. M. Veith and Ö. <strong>Ö. Çapraz</strong>, </div>
    <div>
    <strong>Chemo-Mechanical Instabilities in Lithium Cobalt Oxide at Higher State-of-Charge in Li-Ion Batteries</strong>, Electrochimica Acta, 2024, In Press </div>
    <div><br></div>
    <div><br></div>
    <div>
    <h3>ABSTRACT</h3>
    <div>Transition metal oxide cathodes are widely used in commercial Li-ion batteries. However, their practical charge capacity is limited due to severe chemo-mechanical instabilities at higher charge voltage, and state-of-charge condition. Here, in situ stress and strain measurements were synchronized to probe mechanical deformations on the lithium cobalt oxide (LCO) cathode via a multi-beam stress sensor and digital image correlation, respectively. In situ mechanical measurements revealed how Li removal from the electrode structure induces deformations on the LCO cathodes during cycling. The structure and morphology of the LCO cathodes were further investigated by X-ray diffraction (XRD) and scanning electron microscopy (SEM) studies. Two distinct electrochemical and mechanical behaviors were identified when the LCO was charged up to 4.65 V. The LCO undergoes a compressive stress generation when charged up to 4.2 V and surface fractures on the LCO particles were detected by SEM. LCO cathode experienced significantly large contractions (negative strains) when charged up to 4.65 V, where intergranular crack formation and phase transformation were detected on the LCO particles via SEM and XRD, respectively. Overall, the study bridges complicated structural deformations with in situ analysis of mechanical degradations in LCO cathodes charged at higher voltages. The correlation is vital to understanding instability mechanisms in transition metal oxides at high voltages for alkali metal ion batteries.</div>
    </div>
    <div><br></div>
    <div>fulle article: <a href="https://doi.org/10.1016/j.electacta.2024.145223" title="Persistent link using digital object identifier" rel="nofollow external" class="bo"><span><span>https://doi.org/10.1016/j.electacta.2024.145223</span></span></a>
    </div>
    <div><br></div>
    </div>
]]>
</Body>
<Summary>B. Bal*, B. Ozdogru*, M. Wable, V. Murugesan, G. M. Veith and Ö. Ö. Çapraz,   Chemo-Mechanical Instabilities in Lithium Cobalt Oxide at Higher State-of-Charge in Li-Ion Batteries, Electrochimica...</Summary>
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<Tag>capraz</Tag>
<Tag>fall-2024</Tag>
<Tag>research</Tag>
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<NewsItem contentIssues="true" id="144927" important="false" status="posted" url="https://my3.my.umbc.edu/groups/cwitaffiliates/posts/144927">
<Title>Intern of the Week: Tess Clayville</Title>
<Tagline>Check out Tess's internship!</Tagline>
<Body>
<![CDATA[
    <div class="html-content"><span><p><span><strong>Name: </strong></span></p>
    <p><span>Tess Clayville</span></p>
    <p><span><strong>Pronouns: </strong></span></p>
    <p><span>She/Her</span></p>
    <p><span><strong>Semester of Internship: </strong></span></p>
    <p><span>Summer 2024</span></p>
    <p><span><strong>Major: </strong></span></p>
    <p><span>Psychology</span></p>
    <p><span><strong>Current Class Level: </strong></span></p>
    <p><span>Senior</span></p>
    <p><span><strong>This semester I completed a(n): </strong></span></p>
    <p><span>Internship</span></p>
    <p><span><strong>Internship, Co-op, or Research Site (Company/Organization Name): </strong></span></p>
    <p><span>Kennedy Krieger Institute - Pediatric Feeding Disorders Unit</span></p>
    <p><span><strong>Location of the Organization (City, State): </strong></span></p>
    <p><span>Baltimore, Maryland</span></p>
    <p><span><strong>Title of Position: </strong></span></p>
    <p><span>Behavioral Data Specialist</span></p>
    <p><strong><span>Tell us about your internship, co-op, or research opportunity, including your day-to-day responsibilities:</span><span><br></span></strong><span>During my time in the Pediatric Feeding Disorders Unit, I collaborated with a multidisciplinary clinical team to oversee the care of four pediatric patients, managing their progress from admission to discharge over the eight-week program. My main role included recording data during meal sessions, tracking up to 15+ variables at once using BData Pro software. I then entered and analyzed data into Excel sheets and graphs, collaborating with supervisors to refine individualized treatment plans based on patient progress. I also had supervised meetings with psychologists two to three times per week to apply creative problem-solving strategies to address feeding challenges, enhancing patient engagement and outcomes for up to three children daily during therapeutic meal sessions.</span></p>
    <p><strong><span>Describe the process of obtaining your position. When did you hear of the position and submit your application?</span><span><br></span></strong><span>After struggling to find a summer internship, I reached out to my advisor for extra help. She recommended a small list of internships to her students. After reading through the list, I directly contacted the Pediatric Feeding Disorders Unit at the Kennedy Krieger Institute with my resume, cover letter, and additional information about myself. I heard back within the same week about scheduling an interview!</span></p>
    <p><strong><span>What resources did you use to find your current experience?</span><span><br></span></strong><span>UMBC Career Center, Faculty Connections</span></p>
    <p><strong><span>What have you enjoyed the most about your position and organization?</span><span><br></span></strong><span>What I enjoyed most about my position at the Kennedy Krieger Institute was the opportunity to work directly with children and adolescents facing unique challenges. Being part of their treatment process and witnessing their progress was incredibly fulfilling. I also appreciated the collaborative environment, where I gained different perspectives on patient care and received invaluable mentorship from the professionals in the Pediatric Feeding Disorders Unit.</span></p>
    <p><strong><span>How do you believe you have made an impact through your work?</span><span><br></span></strong><span>I believe I made an impact in the Pediatric Feeding Disorders Unit by contributing to the care and treatment of children and adolescents with feeding disorders. My role in collecting, analyzing, and interpreting data during meal sessions supported the creation of individualized treatment plans, which were crucial to each patient’s progress. Additionally, my efforts in reinforcing behavioral strategies during treatment sessions helped patients overcome their challenges and achieve important milestones in therapy.</span></p>
    <p><strong><span>What advice would you give to another student who is seeking an internship or similar experience?</span><span><br></span></strong><span>My advice to another student would be to step outside of your comfort zone. You may discover a new area of interest or develop new skills. Sometimes the most rewarding experiences come from positions that challenge your expectations. Also, don't hesitate to reach out to UMBC faculty for guidance! Advisors, professors, and the Career Center are all great resources for finding opportunities and preparing for the application process.</span></p>
    <p><span><strong>Please provide a short reflection or quote about what you liked most about your position / earning internship credit / working with the Career Center.</strong></span><span><br></span><span>What I liked most about my position was the hands-on experience of working directly with patients and being part of a collaborative team focused on meaningful work. The Career Center helped me develop my resume and prepare for interviews, guiding me toward opportunities that aligned with my career goals.</span></p>
    <br><br></span></div>
]]>
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<Summary>Name:   Tess Clayville  Pronouns:   She/Her  Semester of Internship:   Summer 2024  Major:   Psychology  Current Class Level:   Senior  This semester I completed a(n):   Internship  Internship,...</Summary>
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<PostedAt>Sun, 20 Oct 2024 17:19:30 -0400</PostedAt>
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<NewsItem contentIssues="true" id="144856" important="false" status="posted" url="https://my3.my.umbc.edu/groups/cwitaffiliates/posts/144856">
<Title>REPOST: Social Science Research in Government, Business, &amp; Non-Profit Careers:</Title>
<Tagline>An Alumni Panel</Tagline>
<Body>
<![CDATA[
    <div class="html-content">
    <div><span><div>REPOST!</div>
    <div>(Note that before she graduated from UMBC, <strong>Manisha Vepa (GLBL/ECON '18) </strong><span>participated in the <a href="https://shrivercenter.umbc.edu/publicservicescholars/" rel="nofollow external" class="bo">Maryland Public Service Scholars Program</a> with the Governor's Summer Internship Program)</span>
    </div>
    <div><span><br></span></div>
    <div><br></div>
    <div>Learn how UMBC  alumni are using social science research to support government and business clients.  The panel will be moderated by CS3's Acting Director, Dr. Eric Stokan, and will be followed by refreshments and networking.</div>
    <hr>
    <div><strong>Michele Berry, MPP  (PUBL '23)</strong></div>
    <div>Stormwater Program Coordinator, Chesapeake Stormwater Network</div>
    <div><br></div></span></div>
    <div><strong>Amanda Cardone, MA (SOCY '23) </strong></div>
    <div>
    <div><span>Survey Methodologist, Data Practice Area</span></div>
    <div><span>RTI International</span></div>
    </div>
    <div><br></div>
    <div>
    <div><span><strong>Amy Soukup, MA (ECON '22) </strong></span></div>
    <div>Community Data Analyst, Live Baltimore</div>
    <div><span>Returned Peace Corps Volunteer, Albania </span></div>
    <div><br></div>
    </div>
    <div>
    <div><span><strong>Manisha Vepa (GLBL/ECON '18) </strong></span></div>
    <div>Economic Research Analyst, Ascendant Program Services/SelectUSA @ Dept. of Commerce</div>
    <div><span><hr></span></div>
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    </div>
]]>
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<Summary>REPOST!  (Note that before she graduated from UMBC, Manisha Vepa (GLBL/ECON '18) participated in the Maryland Public Service Scholars Program with the Governor's Summer Internship Program)...</Summary>
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<PostedAt>Fri, 18 Oct 2024 15:10:41 -0400</PostedAt>
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<NewsItem contentIssues="true" id="144895" important="true" status="posted" url="https://my3.my.umbc.edu/groups/cwitaffiliates/posts/144895">
<Title>Great news!!!  RECORDING AVAILABLE!</Title>
<Tagline>"Beyond white privilege:  white people's stake in the fight"</Tagline>
<Body>
<![CDATA[
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    <span>In 2017, the Shriver Center received funding from the American Association of Colleges and Universities to create a </span><a href="https://shrivertrhtcampuscenter.org/" rel="nofollow external" class="bo">Truth, Racial Healing and Transformation Campus Center</a><span>. Under the leadership of the Shriver Center’s Choice Program, the Shriver Center is working to become an anti-racist organization. </span>
    </div>
    <div><span><br></span></div>
    <div><span>At The Shriver Center, we believe that anti-racism is an on-going process of reflection, critical examination, and healing that will continue to shape and reshape our culture, policies, procedures, services, and beyond.  </span></div>
    <div><span><br></span></div>
    <div>
    <span>On Thursday, October 17th, <strong>Showing Up for Racial Justice (SURJ) hosted "Beyond white privilege:  white people's stake in the fight against MAGA" with Heather McGhee.  </strong></span><span></span>
    </div>
    <div><span><strong><br></strong></span></div>
    <div>
    <span>If you missed last night's event, you can watch the recording </span><strong><span><u><a href="https://us02web.zoom.us/rec/play/RaTJwoTGVBAtuRSL6Ar8ZH8ozDw4yJGO07ngJGNC0sF0KyaARl7Puu1bPj8A2fDwYGa0Le8tP04_TzuC.yS2dK89nsr0uHFON?canPlayFromShare=true&amp;from=my_recording&amp;continueMode=true&amp;componentName=rec-play&amp;originRequestUrl=https%3a%2f%2fus02web.zoom.us%2frec%2fshare%2f37XSqUm9x4GCSsclxCPI_Uny5LmAII1zH4xSdAtfLt5EH68CTC5cOXz6BFUsIkdG.HL-S2GULfUbV1OVE&amp;emci=275c5aa9-5a8d-ef11-8474-000d3a98fa6b&amp;emdi=407980a0-608d-ef11-8474-000d3a98fa6b&amp;ceid=1743142" rel="nofollow external" class="bo">here</a></u></span>.</strong>
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    <div><br></div>
    </div>
]]>
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<Summary>In 2017, the Shriver Center received funding from the American Association of Colleges and Universities to create a Truth, Racial Healing and Transformation Campus Center. Under the leadership of...</Summary>
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<NewsItem contentIssues="false" id="144872" important="false" status="posted" url="https://my3.my.umbc.edu/groups/cwitaffiliates/posts/144872">
<Title>Several Shriver Center mentions in last weekend's "Education Section" of The Baltimore Sun</Title>
<Tagline>Leadership, cultural diversity, and equity matter!</Tagline>
<Body>
<![CDATA[
    <div class="html-content">This past weekend, <strong>The Baltimore Sun's Education Section</strong> featured <strong>several</strong> Shriver Center-connected programs.  On page 2, "Combining teaching and learning;  opportunities in childhood education abound" highlights the work of <strong>The Maryland Early Childhood Leadership</strong> (MECLP). Longtime <strong>Shriver Living Learning Community</strong> junior <strong>Vunnathi Ankem</strong>, psychology, shares her experience of on-campus dining in "Food for thought:  dining halls celebrate cultural diversity and tackle food insecurity" (page 3). <div><br></div>
    <div>However, the article does not mention <a href="null" rel="nofollow external" class="bo">Retriever Essentials</a>, a faculty, staff, and student partnership to tackle food insecurity in our university community. This campus-wide collaboration includes UMBC students through the Community Engaged Learning and the Shriver Peaceworker Fellows programs.</div>
    <div><br></div>
    <div>For more info on Shriver Center programs, visit:</div>
    </div>
]]>
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<Summary>This past weekend, The Baltimore Sun's Education Section featured several Shriver Center-connected programs.  On page 2, "Combining teaching and learning;  opportunities in childhood education...</Summary>
<Website>https://shrivercenter.umbc.edu/</Website>
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<PostedAt>Thu, 17 Oct 2024 17:34:20 -0400</PostedAt>
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<NewsItem contentIssues="true" id="144869" important="false" status="posted" url="https://my3.my.umbc.edu/groups/cwitaffiliates/posts/144869">
<Title>Women's Center Hours Adjustment Next Week</Title>
<Tagline>Changes on 10/21 and 10/24</Tagline>
<Body>
<![CDATA[
    <div class="html-content">On Monday 10/21, the Women's Center will open at 12pm and close at 5pm.<div><br></div>
    <div>On Thursday 10/24, the Women's Center will be closed all day, as staff will be at a division wide retreat. </div>
    <div><br></div>
    <div>We apologize for any inconvenience this may cause. After this week our normal hours will resume from 9:30-5 Monday through Thursday. If you have any concerns please email <a href="mailto:womenscenter@umbc.edu">womenscenter@umbc.edu</a>. </div>
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<Summary>On Monday 10/21, the Women's Center will open at 12pm and close at 5pm.    On Thursday 10/24, the Women's Center will be closed all day, as staff will be at a division wide retreat.      We...</Summary>
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<NewsItem contentIssues="true" id="144861" important="true" status="posted" url="https://my3.my.umbc.edu/groups/cwitaffiliates/posts/144861">
<Title>(Link corrected) TONIGHT! Reckoning with our privilege is a journey in social justice work</Title>
<Tagline>"Beyond white privilege:  white people's stake in the fight"</Tagline>
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    <div><span>At The Shriver Center, we believe that anti-racism is an on-going process of reflection, critical examination, and healing that will continue to shape and reshape our culture, policies, procedures, services, and beyond.  </span></div>
    <div><span><br></span></div>
    <div>
    <span>Tonight at 8pm (EST), <strong>Showing Up for Racial Justice (SURJ) will host "Beyond white privilege:  white people's stake in the fight against MAGA" with Heather McGhee.  </strong>It's free.  To register, go to </span><span><strong><u><a href="https://mobilize.us/s/3siLCc" rel="nofollow external" class="bo">https://mobilize.us/s/3siLCc</a></u></strong></span>
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<NewsItem contentIssues="true" id="144843" important="true" status="posted" url="https://my3.my.umbc.edu/groups/cwitaffiliates/posts/144843">
<Title>Reckoning with our privilege is a journey in social justice work</Title>
<Tagline>"Beyond white privilege:  white people's stake in the fight"</Tagline>
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<![CDATA[
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    </div>
    <div><span><br></span></div>
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    <div><span><br></span></div>
    <div>
    <span>Tonight at 8pm (EST), <strong>Showing Up for Racial Justice (SURJ) will host "Beyond white privilege:  white people's stake in the fight against MAGA" with Heather McGhee.  </strong>It's free.  To register, go to </span><span><strong><u><a href="https://mobilize.us/s/3siLCc" rel="nofollow external" class="bo">https://mobilize.us/s/3siLCc</a></u></strong></span>
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]]>
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<PostedAt>Thu, 17 Oct 2024 08:06:24 -0400</PostedAt>
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